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BioLinkBERT-Cardiology (LoRA-adapted)

BioLinkBERT-base + LoRA

University of Nevada Las Vegas / Concorde Career Colleges (Young & Matthews)

Clinical text

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Text & EHR

General Purpose / Multi-task

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General / Foundation

Embedding

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Representation Learning

Transformer

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Transformer

PyTorch

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PyTorch

Apache 2.0

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Permissive

LoRA-adapted domain-specialized cardiology text embedding model built on BioLinkBERT (340M parameters), identified as the top performer among 10 encoder- and decoder-style transformer architectures benchmarked head-to-head for cardiology semantic retrieval. LoRA fine-tuning on ~150,000 cardiology-textbook-derived sentence pairs raised its cardiology semantic-separation score from 0.033 (zero-shot) to 0.510, the highest of any evaluated architecture (including decoder models up to 10x larger), while remaining Pareto-optimal for the separation/throughput trade-off at 143.5 embeddings/sec and a 1.51GB memory footprint.

memory Specifications

category

Architecture

Transformer

BioLinkBERT (340M-parameter BERT-style encoder, pretrained on PubMed abstracts with document-link prediction) adapted via LoRA (rank 16, attention query/value projections) with an InfoNCE contrastive objective on cardiology textbook sentence pairs

code

Framework

PyTorch

calendar_month

Added to catalog

2026-08-10

gavel License

Apache 2.0

check_small Open source check_small Commercial use OK check_small Modifications allowed Attribution required No share-alike requirement

License for model weights only. Associated code may be licensed seperately, check code source for specific terms.

description Publication

database Training & evaluation data

Cardiology Textbook Sentence-Pair Corpus (CardioEmbed family)

train

~150,000 anchor-positive sentence pairs derived from 7 cardiology textbooks; text corpus, not human-subject data

science Capabilities & performance

Domain-specialized cardiology text embedding for semantic retrieval and similarity search

Embedding General Purpose / Multi-task