Emory University / Georgia Institute of Technology / Duke University / UCSF (Ding, Guo, Chen, Lee, Rudin, Hu)
Training code and model weights not public. Contact creators for more information.
Self-supervised foundation model for photoplethysmography (PPG) that explicitly targets the low-signal-quality problem endemic to real-world wearable and bedside PPG, rather than assuming clean input. A Siamese ResNet (SimSiam-style) encoder is pretrained to produce similar representations for temporally-adjacent high- and low-quality PPG segments presumed to share the same underlying physiological state, with curriculum learning that gradually increases the artifact-level gap between paired segments. Pretrained on over 36 million 30-second PPG pairs drawn from more than 24,100 UCSF ICU patients, then fine-tuned and evaluated on six downstream cardiovascular-monitoring datasets/tasks (heart rate, respiratory rate, blood pressure, and atrial-fibrillation detection), where it exceeds prior state-of-the-art by roughly 75% on respiratory-rate estimation and 5% on AF detection, with performance scaling with backbone depth (ResNet152 best). Code and the pretraining dataset are not public; the pretraining data is available upon request under a UCSF-Emory data use agreement.
Architecture
CNN (1D)
Siamese, shared-weight ResNet (1D CNN) encoder trained with a SimSiam-style similarity loss on quality-mismatched positive pairs, plus curriculum learning over increasing artifact severity
Added to catalog
2026-08-10
UCSF ICU PPG Cohort (SiamQuality pretraining)
Waveform dataset including PPG, other physiological signals, cardiac arrhythmia alarms, and linked EHR from more than 24,100 ICU patients at UCSF Medical Center; used to derive over 36 million 30-second PPG pairs for contrastive pretraining.
Atrial fibrillation detection from wearable/bedside PPG
Blood pressure estimation from wearable/bedside PPG
Heart-rate and respiratory-rate estimation from wearable/bedside PPG