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DeepStrain

Massachusetts General Hospital / Harvard-MIT HST (Morales et al.)

Cardiac MRI

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Cardiac MRI

Cardiac chamber segmentation

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Structural Heart & Cardiomyopathy

Myocardial strain (global/regional)

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Cardiac Function & Hemodynamics

Segmentation

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Segmentation & Detection

Regression

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Regression

Hybrid

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Hybrid / Multi-branch

TensorFlow

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TensorFlow / Keras

Public Domain

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Permissive

Fully automated deep learning workflow for characterizing cardiac mechanics from balanced steady-state free-precession (bSSFP) cine cardiac MRI. It decouples two convolutional networks—a segmentation net (CarSON) and a 3D motion-estimation net (CarMEN)—to derive left- and right-ventricular volumes plus global and regional myocardial strain and strain rate without manual tracing. Trained and validated on healthy and cardiovascular-disease subjects and shown to be robust across MRI vendors, with excellent intra-scanner repeatability for strain. Developed at Massachusetts General Hospital and the Harvard-MIT Division of Health Sciences and Technology.

memory Specifications

category

Architecture

Hybrid

Two decoupled U-Net-style CNNs: CarSON (segmentation) + CarMEN (3D motion estimation) for strain analysis

code

Framework

TensorFlow

calendar_month

Added to catalog

2026-07-22 21:02:46

gavel License

Public Domain

check_small Open source check_small Commercial use OK check_small Modifications allowed No attribution required No share-alike requirement

License for model weights only. Associated code may be licensed seperately, check code source for specific terms.

description Publication

DeepStrain: A Deep Learning Workflow for the Automated Characterization of Cardiac Mechanics open_in_new

Morales MA, van den Boomen M, Nguyen C, Kalpathy-Cramer J, Rosen BR, Stultz CM, Izquierdo-Garcia D, Catana C

Frontiers in Cardiovascular Medicine · 2021 · original paper

DOI: 10.3389/fcvm.2021.730316

database Training & evaluation data

DeepStrain Cardiac MRI Cohort (healthy + CVD)

train

public 150 subjects

Short-axis bSSFP cine MRI, healthy and cardiovascular-disease subjects

science Capabilities & performance

Bi-ventricular myocardial segmentation (LV/RV)

Segmentation Cardiac chamber segmentation

Global and regional myocardial strain and strain rate

Regression Myocardial strain (global/regional)